After you sign in to Windows, many programs start on their own—sync clients, input methods, GPU utilities, chat apps, and more. Some are unnecessary, yet they still slow boot and logon and use memory and CPU. At other times, you need a trusted tool to run automatically after logon.
Startup Manager in Windows Manager brings the most common auto-start locations into one window: registry Run/RunOnce, per-user startup folders, and Microsoft Store (UWP) apps. Enable or disable items, start or stop processes immediately, clean up in bulk, or use a wizard to add new entries. In-app help matches this article: green = newly added, red = invalid (target missing), gray = disabled.
What follows covers the main window, day-to-day management, five ways to add items, plus Disable auto-startup in Settings and Advanced Startup.
In the Windows Manager main window, go to:
Optimizer → Startup Manager
The tool opens in its own window. Get a trial from the download page if needed. Run as administrator when changing all-users registry or startup folder entries.
The window has three areas:
Row colors match in-app help:
The status bar shows the list count and the selected item’s location (for example, a registry path). The ? help button summarizes this and links to Online Help for this page.

Click General Startup for a combined view, or expand Startup Folder and Registry. Windows apps are listed separately; enable and disable work differently there (no delete, edit path, or go to file).
Check or uncheck the box. The program moves registry values between Run and Run- (disabled suffix), or moves startup-folder shortcuts to a DisableStartup folder. Windows apps update the related State value. The toolbar Enable/Disable button and the context menu do the same thing.
For valid Win32 or Windows app entries, Start runs the program now. Stop ends a running process without signing out—useful for quick tests.
Press F5 or click Refresh after external registry or folder changes.
Common toolbar buttons:
Right-click the list or an item for enable/disable, batch, delete, goto file, edit, query, and similar actions (not refresh, add, settings, or exit).
Click toolbar Add. The dialog has Type, Target (full command line), Name (list display name), and Section (location). New items are enabled by default and often appear in green.
Use this when you know the .exe or .bat path. Type, browse, or drag a file into Target. Name is filled from the file description and can be edited. If the custom name differs from the description, an _ prefix is added when saved.
Pick a shortcut from installed software. This opens Start Menu Manager in selection mode; target and name are filled automatically.

Add shell tools, Control Panel applets, MMC snap-ins, and similar items. Opens Windows Utilities; selection may use forms like explorer.exe shell:::{...}.

Use this when the program is already running. Choose from the drop-down; target is the process executable (some system services are filtered out).

Add a Microsoft Store / UWP app. After selection, the entry is saved as explorer.exe shell:appsFolder\...—a good way to run store apps at logon.
When adding or editing an item, pick where it should be stored:
HKLM.HKCU.Prefer Current User for personal apps. Use All Users when every account should run it (often needs admin). Run or the startup folder suits everyday auto-start; RunOnce may be removed after one run. Others (RunOnceEx, RunServices, and so on) appear in the list but are not offered in the Add wizard.
Others → Advanced Startup opens a separate window for deep registry auto-start: Winlogon (Shell, Userinit), AppInit DLLs, shell execute hooks, Active Setup, and more. Enable/disable, delete, restore defaults, goto file—change only if you understand the entry.
Also under Others: Service Manager and Task Scheduler Manager for services and scheduled tasks that affect startup. They complement Run and startup folders in the main window.
Beyond unchecking items in the list, Startup Manager offers system-level blocking: toolbar Settings → Tweak Settings. The ? help and the group box Disable auto-startup feature contain six checkboxes for six common location types.
After you click OK, the program tells you to restart or sign out. Then every existing item in checked locations—and any program that tries to add itself there later—will not auto-start with Windows. This is stricter than disabling items one by one and helps stop unknown software from re-adding Run or startup-folder entries.
Labels match the left tree, for example “Disable all startup items in [Registry\All Users\Run]”:
Check all six, or only the locations you want to tighten—for example Current User\Run alone.
The options share one dialog but work differently underneath:
DisableLocalMachineRun, DisableCurrentUserRun, DisableLocalMachineRunOnce, DisableCurrentUserRunOnce) blocks that Run/RunOnce class. Uncheck, click OK, and restart to remove the policy.DisableStartup folder and remove the original Startup folder. Unchecking moves files back—the same idea as per-item disable in the main list, but for the whole folder.This does not cover Windows apps (UWP), Advanced Startup, services, or scheduled tasks. Use Service Manager and Task Scheduler Manager (section 8) for full coverage.
Disable auto-startup blocks an entire location class. Checkboxes in the main list manage individual entries while that location still allows auto-start. If a Run key is policy-blocked, items may still appear but will not start with Windows until you clear the policy, restart, and re-enable what you need.
In-app help notes that this feature can shorten startup time, reduce background processes, and lower the risk of unwanted programs auto-starting. To undo it, clear the relevant checkboxes here or re-enable individual items in the main list.
DeleteInvalidItems launch argument to clean them silently.Tip: On your first cleanup, disable half of the suspicious items, restart, and see how the PC feels before turning off more. That avoids shutting down something essential all at once.
Startup Manager is a core Optimizer tool in Windows Manager, alongside Settings Security and Move System Folders for startup, system entry points, and folder paths. See the product page.
Download Windows Manager and open Optimizer → Startup Manager.